Data and Signal Processing Algorithms and Software for LC-MS and MS/MS
- SeMoP: a new algorithm for unrestricted search for peptide modifications, developed by visiting scientist Christian Baumgartner. Pubmed>>
- GlyDB: a tool for automatic selection and annotation of glycopeptide MS/MS spectra in LC-MS analysis of protein digests (Jian Min Ren). Pubmed>>
- Overview of MEND denoising, PRESEL precursor selection, and denoising by wavelet transforms (Victor Andreev). Overview>>
- A New Algorithm for Quantitation of LC-MS Proteomic Data (Andreev, ASMS 2005). Full Poster>>
- MEND: denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain (Andreev, ASMS 2003)
Paper>>; Poster Abstract>>; Full Poster>> - PRESEL: Optimized Selection of MS/MS Precursors in LC-MALDI TOF/TOF of Complex Proteomic Mixtures
Poster Abstract>>; Full Poster>> - Increased Peptide Identifications by Enhanced Data Processing of MALDI MS Data Prior to Database Searching
Paper>> (Rejtar, Anal Chem. 2004) Poster Abstract>> (Rejtar, ASMS 2004) - On the Advantage of Denoising and Peak Picking by MEND in LC-MALDI-QqTOF Analysis (Ens, ASMS 2004)
Abstract>>; Full Poster>> - The Barnett Computer Cluster
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